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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTTCCCTTTACAACTTTGAATGAAGAAAAAATAAACAGTGAGAACGATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatatatatttcacacaaaaattaattaagtttttagcgcacattacatagaatttaatggtcatgcacattataatcataatattttaaataat...

Basic information

species Glycine max
transcript GLYMA20G34670.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315404|gb|FK009206.1|FK009206
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|19346640|gb|BM891520.1|BM891520
EST:     CCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: CCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|12688232|gb|BG154568.1|BG154568
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTNTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|16106179|gb|BI893919.1|BI893919
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|12489945|gb|BG043457.1|BG043457
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|10234051|gb|BE802939.1|BE802939
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAGAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTG
EST: gi|16349224|gb|BI974819.1|BI974819
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|16349097|gb|BI974692.1|BI974692
EST:     CATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: CATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|151402975|gb|EV272788.1|EV272788
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|51337584|gb|CO981450.1|CO981450
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|16105375|gb|BI893115.1|BI893115
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|51341691|gb|CO983008.1|CO983008
EST:     ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG
EST: gi|13789655|gb|BG652246.1|BG652246
EST:     ATTGGGTTGGCTCCGTATTAGGCAACATTCACCCCAGCATAAGCACCTCG                         ATCAAAGAGCAAAAGTACATTTTGTTTTATGGGGGCAACGACAAAGACTGG
genomic: ATTGGGTTGGCTCCGTATTAGGCAGCATTCACCCCAGCATAAGCACCTCGgtaagtatat ... tatgaagcagATCAAAGAGCAAAAGTACATTTTCTTTTATGGGGGCAACGACAAAGACTGG