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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTGGACAGAGAGGTTGACGATGGTATTGAAACCGTGTGTCTGAACTTACCAGCAGTAATAACgtaagtgtcattcttttaagcctgctgtatcaaccctatctatatttttaagaagctttgcccttttgtatatatgtatcacatggtggtgacctaagat...

Basic information

species Glycine max
transcript GLYMA20G34520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv05s0049g00470.t01 (Vitis vinifera), 5'ss of exon 4
GTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTGGACAGAGAGGTTGACGATGGTATTGAAACCGTGTGTCTGAACTTACCAGCAGTAATAACgtaagtgtc--attct--tttaagcctgctgtatcaaccctatcta-tatttttaagaagctttgcccttttgtatatatgtatcacatggtggtgacctaagat
|| || || ||||| |||||| |||| || |||||||| |||||||| || | |||| |||||||  | ||| || |||||||||||||||| |||||| ||||  | |||  |||     || | |    |  |||| || | |||||  |   |||||   || | | | | | |  ||     |  || | ||    
GTTGTGCTGGACAAGGAGAAAGAGGTGGCAACAGTGGAGAGAGAGGTGGATGGTGGTCTTGAAACTTTATGTTTGGACTTACCAGCAGTAATCACgtaattgtctcactctgttttctatttgttcttcttatgctatttactgtttttctg--tctttgtttttgttt-tctgtcttacatgccatcatgtcttaca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397075|gb|EV266948.1|EV266948
EST:     GTTGACGATGGTATTGAAACCGTGTGTCTGAACTTACCAGCAGTAATAAC                         CACTGATCTGAGGCTGAACCAACCAAGGTATGCTACTCTTCCCAACATAAT
genomic: GTTGACGATGGTATTGAAACCGTGTGTCTGAACTTACCAGCAGTAATAACgtaagtgtca ... cttcttgcagCACTGATCTGAGGCTGAACCAACCAAGGTATGCTACTCTTCCCAACATAAT
EST: gi|15814452|gb|BI786727.1|BI786727
EST:     GTTGACGATGGTATTGAAACCGTGTGTCTGAACTTACCAGCAGTAATAAC                         CACTGATCTGAGGCTGAACCAACCAAGGTATGCTACTCTTCCCAACATAAT
genomic: GTTGACGATGGTATTGAAACCGTGTGTCTGAACTTACCAGCAGTAATAACgtaagtgtca ... cttcttgcagCACTGATCTGAGGCTGAACCAACCAAGGTATGCTACTCTTCCCAACATAAT