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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggggattataagtgcaatgaaatgtatggatatggtacttttggctttacagtttatccagtcaatccgctaagaaaccttttttcacttatttttgcagGATGGAAATTCTGGAGAGGATTTCAATAAAGATTCTGTAGAGCGTGATGAAAGGCGCCTAACAGAATTGGGCCGTAGGACTTTGGAAATATTTGTCCTTG

Basic information

species Glycine max
transcript GLYMA20G34410.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193552015|gb|FK507358.1|FK507358
EST:     AAGTGTCCTC-AAACCGTACGAAG                         GATGGAAATTCTGGAGAGGATTTCAATAAAGATTCTGTAGAGCGTGATGAA
genomic: AAGTGTCCTCAAAACCGTACGAAGgtaagacata ... atttttgcagGATGGAAATTCTGGAGAGGATTTCAATAAAGATTCTGTAGAGCGTGATGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacagtttatccagtcaatccgctaagaaaccttttttcacttatttttgcagGATGGAAATTCTGGAGAGGATTTCAATAAAGATTCTGTAGAGCGTGATGAAAGGCGCCTAACAGAATTGGGCCGTAGGACTTTGGAAATATTTGTCCTTG
                                ccttttttcacttatt  CT-rich tract
                                  ttttttcacttatttt  TA-rich tract