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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattgcataggtgttatcttaatgtatatgtcctttctccatcttaattgttaaaaaaggttactacactaaaaatcttatttgtttttgtctttaacagGACCAAAACCTTTGGCATTATATGGAAGATATACGTGGAAGATAGAAAAGTTTTCTCAAATTACCAAAAGGGAACTTCGCAGTAGTGCATTTGAGGTTGG

Basic information

species Glycine max
transcript GLYMA20G34410.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208084320|gb|GD882296.1|GD882296
EST:     TATCGCGTCCACTTCGCCCCCTTACTGGGACACTGATGATGAAGATGATG                         GACCAAAACCTTTGGCATTATATGGAAGATATACGTGGAAGATAGAAAAGT
genomic: TATCGCGTCCACTTCGCCCCCTTACTGGGACACTGATGATGAAGATGATGgtgacaaatt ... tctttaacagGACCAAAACCTTTGGCATTATATGGAAGATATACGTGGAAGATAGAAAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgttaaaaaaggttactacactaaaaatcttatttgtttttgtctttaacagGACCAAAACCTTTGGCATTATATGGAAGATATACGTGGAAGATAGAAAAGTTTTCTCAAATTACCAAAAGGGAACTTCGCAGTAGTGCATTTGAGGTTGG
                     cactaaa  putative branch site (score: 2)
                                   tttgtttttgtcttt  putative PPT
                        taaaaatcttatttgt  TA-rich tract