1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctagttctttctttagagatatgaaaaatcagtgtgtgggctagttctcagtttcttatgtgatatcttactctaaattctgtctcaattttgcatttagAAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTTCTGCTTCAAAGAATGGCGGTGTGTTAGAAAATAGACATGCACACTGTAA
species | Glycine max |
transcript | GLYMA20G34210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATTAGAGCCAGTTCGATCCCACGCCCTCGTGCTGTCATTTCTAGTCCTG AAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTTEST: gi|9901890|gb|BE610858.1|BE610858
genomic: TATTAGAGCCAGTTCGATCCCACGCCCTCGTGCTGTCATTTCTAGTCCTGgtaaaatgtc ... ttgcatttagAAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTT
EST: TATTAGAGCCAGTGCGATCCCACGCCCTCGTGCTGTCATTTCTAGTCCTG AAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTTEST: gi|21601506|gb|BQ611837.1|BQ611837
genomic: TATTAGAGCCAGTTCGATCCCACGCCCTCGTGCTGTCATTTCTAGTCCTGgtaaaatgtc ... ttgcatttagAAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTT
EST: TATTAGAGCCAGTTCGATCCCACGCCCTCGTGCTGTCATTTCTAGTCCTG AAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTT
genomic: TATTAGAGCCAGTTCGATCCCACGCCCTCGTGCTGTCATTTCTAGTCCTGgtaaaatgtc ... ttgcatttagAAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTT
tctcagtttcttatgtgatatcttactctaaattctgtctcaattttgcatttagAAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTTCTGCTTCAAAGAATGGCGGTGTGTTAGAAAATAGACATGCACACTGTAA
ctctaaa putative branch site (score: 3)
tttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagttctttctttagagatatgaaaaatcagtgtgtgggctagttctcagtttcttatgtgatatcttactctaaattctgtctcaattttgcatttagAAAATGACATGATGATCGGGAATAGAAACAAGAATGGAGATGGAAGACTTTCTGCTTCAAAGAATGGCGGTGTGTTAGAAAATAGACATGCACACTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - gaaaaat
- - - - - - - - - - - - - - - - -gtgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtc