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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcgctaactaatttcgatcctttttttttcttcttattcttgtttttaccacttatgtctatgtaactacttttattgatatgtgtgtttttgttgttgtgttttggaattttcagTGTATCCAAAGGTGAAGGTAAGACACGACGACGACGACGCTGAACTTGGTCTCAAAGCTTTCCTCTCTCTATATCTGAAACCATCTCCTTCTCCAG

Basic information

species Glycine max
transcript GLYMA20G34210.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601506|gb|BQ611837.1|BQ611837
EST:     CAACAAACAACACAA                         TGTATCCAAAGGTGAAGGTAAGACACGACGACGACGACGCTGAACTTGGTC
genomic: CAACAAACAACACAAgtcgctaact ... gaattttcagTGTATCCAAAGGTGAAGGTAAGACACGACGACGACGACGCTGAACTTGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaactacttttattgatatgtgtgtttttgttgttgtgttttggaattttcagTGTATCCAAAGGTGAAGGTAAGACACGACGACGACGACGCTGAACTTGGTCTCAAAGCTTTCCTCTCTCTATATCTGAAACCATCTCCTTCTCCAG
            tattgat  putative branch site (score: 3)
                                                ttttc  putative PPT
      tacttttattgatat  TA-rich tract