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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCACATCGAAGGGTGGCCGCCTCACAAACAGCGCAAGGCCTACGACGCCATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgcactttgcatgcattcctctctctcccatgagttgagttgtcacaagtttcatgttcgttgtgcag

Basic information

species Glycine max
transcript GLYMA20G34120.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413795|gb|BF425806.1|BF425806
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
EST: gi|11413830|gb|BF425841.1|BF425841
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTNTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
EST: gi|298176518|gb|HO023105.1|HO023105
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
EST: gi|19345868|gb|BM890748.1|BM890748
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
EST: gi|298173879|gb|HO017215.1|HO017215
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG