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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtttgcactttgcatgcattcctctctctcccatgagttgagttgtcacaagtttcatgttcgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG

Basic information

species Glycine max
transcript GLYMA20G34120.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413795|gb|BF425806.1|BF425806
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
EST: gi|11413830|gb|BF425841.1|BF425841
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTNTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
EST: gi|298176518|gb|HO023105.1|HO023105
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
EST: gi|19345868|gb|BM890748.1|BM890748
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
EST: gi|298173879|gb|HO017215.1|HO017215
EST:     CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTG                         GTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG
genomic: CATTGCTGAGGTCGAGCGTCAGGGTCTTGAACGCCTTCAAATCATGCCTGgttcgtttgc ... cgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgtttgcactttgcatgcattcctctctctcccatgagttgagttgtcacaagtttcatgttcgttgtgcagGTTGTGCAGAGCTTTGTGCCATGCTCGATTCTAAGAAAATAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA