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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgtctcacttgattagtacctagtggagtttagcaaagcaataatgcaagtttaaactttttttacctgtagGCAAAAGGTTTAGAGTGGGATGTTGTCTTCATAGTTAAG

Basic information

species Glycine max
transcript GLYMA20G34060.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34060.1 (Glycine max), 3'ss of exon 18
lower sequence: LOC_Os07g30980.1 (Oryza sativa), 3'ss of exon 20
-------------gtacctgtc-tcacttgattagtacctagtgg-agtttagcaaagcaataatgcaagtttaaactttttttacctgtagGCAAAAGGTTTAGAGTGGGATGTTGTCTTCATAGTTAAG
              || |||   | | || ||| || ||   ||| | ||  |  |   ||  ||| |  ||    ||| | | |   | || ||||||||||||||||||||||||| || || ||  ||
gttctttattcccttaactgcaataaatttatttgtgccatttggcaattctgacactaaaagatgtatattcc--cttctatgattcgcagTCAAAAGGTTTAGAGTGGGATGTTGTGTTTATCGTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193436048|gb|FK401164.1|FK401164
EST:     CTCGGAGGAAGGACAATGAAAACTCTGTGACGTTGACTACCATTCATCAG                         GCAAAAGGTTTAGAGTGGGATGTTGTCTTCATAGTTAAG
genomic: CTCGGAGGAAGGACAATGAAAACTCTGTGACGTTGACTACCATTCATCAGgtacctgtct ... ttacctgtagGCAAAAGGTTTAGAGTGGGATGTTGTCTTCATAGTTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctagtggagtttagcaaagcaataatgcaagtttaaactttttttacctgtagGCAAAAGGTTTAGAGTGGGATGTTGTCTTCATAGTTAAG
                                       ctttttttacctgt  CT-rich tract
                              aagtttaaactttttt  TA-rich tract