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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTATAAGTAGAGAGGGAGGAAACAAAAATTTTGCATCAGTTTTGGCTCCTGGCCAGCATGAAGGTTTAGGgtaaggtggcatgtgtagaagtttgtaaaacaagcaatcttgcaaacatattaagaaacactatctggcatttttatcaattacatgttcatattaatct...

Basic information

species Glycine max
transcript GLYMA20G33990.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33990.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G24180.2 (Arabidopsis thaliana), 5'ss of exon 8
ATTTTTATAAGTAGAGAGGGAGGAAACAAAAATTTTGCATCAGTTTTGGCTCCTGGCCAGCATGAAGGTTTAGGgtaaggtggcatgtgtagaagtttgtaaaacaagcaatcttgcaaacatattaagaaacactatctggcatttttatcaattacatgttcatattaatct
||||||||     |||| || ||| ||||||| | ||||||||||||| |||| |||||||||| | |||||||||||       | |    ||  |  |  ||    ||||  |||||   | ||   ||     ||       ||  ||   || |||  ||  |       
ATTTTTATTTCACGAGATGGTGGACACAAAAAGTATGCATCAGTTTTGTCTCCAGGCCAGCATGGAAGTTTAGGgtaaaaatctgttttataaatatcctctaatt--caatgatgcaatttttttcttaattcacatac----cttagattggtttcatcgtctcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16349427|gb|BI975022.1|BI975022
EST:     AACAAAAATTTTGCATCAGTTTTGGCTCCTGGCCAGCATGAAGGTTTAGG                         ATCTAGCAGGAAACCTGATGATCAGGGCATATCATCATGGGGTTGGAATCT
genomic: AACAAAAATTTTGCATCAGTTTTGGCTCCTGGCCAGCATGAAGGTTTAGGgtaaggtggc ... tgtttttcagATCTAGCAGGAAACCTGATGATCAGGGCATATCATCATGGGGTTGGAATCT