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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTCTTGCTGCTACAATGATACTTGCGGGAATGGAAGAAGAGGCCTTCGCAACTGCCGAGGGAATATTTCTAGCAGGCTGGTCAGAAGATGGATATGGgtaactgcttatgctctctgtcatccataagtgtttttgagtcacctgcattcttccttttttgtgtctgtcaagtagggataggatttcttcatgtgtg...

Basic information

species Glycine max
transcript GLYMA20G33990.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13240419|gb|BG359728.1|BG359728
EST:     GCAACTGCCGAAGGAATATTTCTAGCAAGCTGGTCAGAAGATGGATATGG                         GTACTGGTTTCAGAACACC-GAGGCATGGGACA-TGGATGGGCACTAC
genomic: GCAACTGCCGAGGGAATATTTCTAGCAGGCTGGTCAGAAGATGGATATGGgtaactgctt ... cccatgacagGTACTGGTTTCAGA-CACCAGAGGCATGG-ACAATGGATGGGCACTAC
EST: gi|22524655|gb|BU083466.1|BU083466
EST:     GCAACTGCCGAGGGAATATTTCTAGCANGCTGGTCAGAAGATGGATATGG                         GTACTGGTTTCAAACACCAGAGGCATGG
genomic: GCAACTGCCGAGGGAATATTTCTAGCAGGCTGGTCAGAAGATGGATATGGgtaactgctt ... cccatgacagGTACTGGTTTCAGACACCAGAGGCATGG
EST: gi|15814287|gb|BI786562.1|BI786562
EST:     GCAACTGCCGAGGGAATATTTCTAGCAGGCTGGTCAGAAGATGGATATGG                         GTACTGGTTTCAGACACCAGAGGCATGGACAATGGATGGGCACTACAGGTC
genomic: GCAACTGCCGAGGGAATATTTCTAGCAGGCTGGTCAGAAGATGGATATGGgtaactgctt ... cccatgacagGTACTGGTTTCAGACACCAGAGGCATGGACAATGGATGGGCACTACAGGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGTCTTGCTGCTACAATGATACTTGCGGGAATGGAAGAAGAGGCCTTCGCAACTGCCGAGGGAATATTTCTAGCAGGCTGGTCAGAAGATGGATATGGgtaactgcttatgctctctgtcatccataagtgtttttgagtcacctgcattcttccttttttgtgtctgtcaagtagggataggatttcttcatgtgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA