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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactccttttagacacttcccctgttgatggtatcacagattgagaaatttatttaccttatccctgaaatttcagGAAGTAGATGAGCCACTACAACTTGATATGTCTGAACTATGTTTGAGCAATGATTTTTCCCAAGGGCATGATG

Basic information

species Glycine max
transcript GLYMA20G33770.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33770.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0013g01510.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------------------gtactccttttagacacttccc---------ctgttgatggtatcacagattgaga--aatttatttaccttatccctgaaatttcagGAAGTAGATGAGCCACTACAACTTGATATGTCTGAACTATGTTTGAGCAATGATTTTTCCCAAGGGCATGATG
                                                                || || ||  || ||| |  |               ||   || |   |||||    | ||| |   | || |   |   ||   |||| ||||||||||| || |||||||||||||| ||||||||||| ||  ||||||||   |||||  ||  ||
gtaattcttttttttttttaaattttttgtttttatgtcaattgtcactatacttgatgatatttattcattgaagtcacctatcaaaaaaaaataaaaaataaaattattcattgatttcagtttttaccctttgtttttattatgctagGAGGTAGATGAGCCTCTGCAACTTGATATGTCAGAACTATGTTTAAGTGATGATTTTATACAAGGCAATTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgatggtatcacagattgagaaatttatttaccttatccctgaaatttcagGAAGTAGATGAGCCACTACAACTTGATATGTCTGAACTATGTTTGAGCAATGATTTTTCCCAAGGGCATGATG
 tgttgat  putative branch site (score: 4)
                  attgagaaatttattt  TA-rich tract