Sequence
atgc intronic sequence ATGC exonic sequenceCATGGGCAATTTTGCAGTCGACACTCTAGACTTGGCTGATATCGAATGGTCACCTGATGATAGTGCTATAGTGATATGGGATTCACCACTTGATTACAAGgtaacttcgttctatatatggaaagtctttataagattgcacccaccagcttaatgttttagggtaactggttccatgaaatggtactagaggctttttg...
Basic information
species | Glycine max |
transcript | GLYMA20G33770.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G33770.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G07590.1 (Arabidopsis thaliana), 5'ss of exon 2
CATGGGCAATTTTGCAGTCGACACTCTAGACTTGGCTGATATCGAATGGTCACCTGATGATAGTGCTATAGTGATATGGGATTCACCACTTGATTACAAGgtaact-tcgttctatatatggaaagtctttataagattgcacccaccagcttaatgttttagggtaactggttccatgaaatggtactagaggctttttg----
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AATGGGTAGCTTTGCTGTTGATACCTTGGACTTGGCTGATCTTGAGTGGTCACCTGATGATAGTTCTATTGTAGTGTGGGATTCGCCTCTTGAATATAAGgtatgtatcgttttg-gtattgatgctattt-ttagatagttattggaattttgttatgtttggtttgttggagatatctc-taaaatttgtaccttttgggcag
upper sequence: GLYMA20G33770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0013g01510.t01 (Vitis vinifera), 5'ss of exon 3
CATGGGCAATTTTGCAGTCGACACTCTAGACTTGGCTGATATCGAATGGTCACCTGATGATAGTGCTATAGTGATATGGGATTCACCACTTGATTACAAGgtaacttcgttc-tatatatggaaagtctttataagattgcacccaccagcttaatgttttagggtaactggttccatgaaatggtactagaggctttttg
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TATGGGTGTTTTTGCTGTTGATACGTTGGACTTGGCTGATATTGAATGGTCACCAGATGATAGTGCTATTGTTATCTGGGATTCGCCTCTTGAATACAAGgtttccaaattgacacttctcattgtttgttgtgaatatgaacc-ataattttttttctttattgttgcaattgtggagttctcttaaagaagatttttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207792375|gb|GD765023.1|GD765023EST: CACCTGATGATAGTGCTATAGTGATATGGGATTCACCACTTGATTACAAG GTTCTAATATATTCTCCAGACGGAAGGTGCCTTTTCAAGCATCAAGCATAT
genomic: CACCTGATGATAGTGCTATAGTGATATGGGATTCACCACTTGATTACAAGgtaacttcgt ... tttgatatagGTTCTAATATATTCTCCAGACGGAAGGTGCCTTTTCAAGTATCAAGCATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGGGCAATTTTGCAGTCGACACTCTAGACTTGGCTGATATCGAATGGTCACCTGATGATAGTGCTATAGTGATATGGGATTCACCACTTGATTACAAGgtaacttcgttctatatatggaaagtctttataagattgcacccaccagcttaatgttttagggtaactggttccatgaaatggtactagaggctttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacccac