Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattaagtatacgtgataatgacaactttttttcatacttgtccaaagccaagtagacaatatatgaactttgtttatcttttctgtgcagGCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCTCCATATTTCCAATAATCTTATCTTTGGCTGAAATTGTTATGGCTTCCCA

Basic information

species Glycine max
transcript GLYMA20G33600.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126670|gb|BG791108.1|BG791108
EST:     CTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTT                         GCAGTGGATTTCAAGAAACCTGTCT-CAAGGAAGTCTTAGCAGTGTTTGCT
genomic: CTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTTgtaagtatta ... ttctgtgcagGCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCT
EST: gi|151410062|gb|EV279870.1|EV279870
EST:     CTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTT                         GCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCT
genomic: CTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTTgtaagtatta ... ttctgtgcagGCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCT
EST: gi|151408157|gb|EV277965.1|EV277965
EST:     CTGAGTTTGGGGAATGGTCATGGATATCACTTGAACAAGTAATTGAGCTT                         GCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCT
genomic: CTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTTgtaagtatta ... ttctgtgcagGCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCT
EST: gi|151411978|gb|EV281789.1|EV281789
EST:     CTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTT                         GCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCT
genomic: CTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTTgtaagtatta ... ttctgtgcagGCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgtccaaagccaagtagacaatatatgaactttgtttatcttttctgtgcagGCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCTCCATATTTCCAATAATCTTATCTTTGGCTGAAATTGTTATGGCTTCCCA
                                ctttgtttatcttttc  CT-rich tract
                      aatatatgaacttt  TA-rich tract