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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccttcgtttgttcttaatccttatgattttggtttccgctttttattcatcgaagtttaccaatctctgctgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG

Basic information

species Glycine max
transcript GLYMA20G33600.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33600.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G10620.1 (Arabidopsis thaliana), 3'ss of exon 1
gttccttcgtttgttcttaatccttatgattttggtttccgctttttattcatcgaagtttaccaatctctgct------gtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
        | |  ||  | ||    || |||        |   || ||||   ||| | ||| |    |||         |||||||||||| | || |||||| | || ||||||| | |||||||||||||||||
------gtgatgattgatgatg--gataattggaaacagcttcttctattttccgatgattagctccttctcacaattaagtgcagATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126670|gb|BG791108.1|BG791108
EST:     ATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
genomic: ATCACAAAAAGgttccttcgt ... tgctgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
EST: gi|151410062|gb|EV279870.1|EV279870
EST:     AAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAGgttccttcgt ... tgctgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
EST: gi|151408157|gb|EV277965.1|EV277965
EST:     AAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAGgttccttcgt ... tgctgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
EST: gi|298164126|gb|HO013771.1|HO013771
EST:     AAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAGgttccttcgt ... tgctgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
EST: gi|151411978|gb|EV281789.1|EV281789
EST:     AAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAG                         ATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
genomic: AAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAGgttccttcgt ... tgctgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgattttggtttccgctttttattcatcgaagtttaccaatctctgctgtgcagATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAG
                                         tctctgct  CT-rich tract
                 tttttattcat  TA-rich tract