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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactgctgttcactttacatcctagtttctcaaggtgttattttgatgtgtgtactgctgtgtgcaatatagcttgtaaactagtatgctatccattctgacttttatattgttctcaattattttttaccaatgtggggaaattttttctgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCCCTGCTGCGCCTGCACATGCTATGGAGTTTCCTGCTAAGGAGATTGCTCT

Basic information

species Glycine max
transcript GLYMA20G33390.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020013|gb|CX706755.1|CX706755
EST:     AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAG                         GAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
genomic: AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAGgtaagactgc ... tgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
EST: gi|58023641|gb|CX710382.1|CX710382
EST:     AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAG                         GAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
genomic: AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAGgtaagactgc ... tgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
EST: gi|192295939|gb|FG990935.1|FG990935
EST:     AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAG                         GAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGTATCC
genomic: AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAGgtaagactgc ... tgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
EST: gi|16105779|gb|BI893519.1|BI893519
EST:     AGAATACACATGAGGCAAAGTTTGCACCAG                         GAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
genomic: AGAATACACATGAGGCAAAGTTTGCACCAGgtaagactgc ... tgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
EST: gi|18039345|gb|BM307639.1|BM307639
EST:     AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAG                         GAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCAGCATCC
genomic: AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAGgtaagactgc ... tgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
EST: gi|6719325|gb|AW306972.1|AW306972
EST:     AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAG                         GAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC
genomic: AAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAGgtaagactgc ... tgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattgttctcaattattttttaccaatgtggggaaattttttctgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCCCTGCTGCGCCTGCACATGCTATGGAGTTTCCTGCTAAGGAGATTGCTCT
                                      ttttttctgttt  CT-rich tract
       ttctcaattatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagactgctgttcactttacatcctagtttctcaaggtgttattttgatgtgtgtactgctgtgtgcaatatagcttgtaaactagtatgctatccattctgacttttatattgttctcaattattttttaccaatgtggggaaattttttctgtttggcagGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCCCTGCTGCGCCTGCACATGCTATGGAGTTTCCTGCTAAGGAGATTGCTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT