Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatggtggactctattcttactgttatttgccttgtattatagctgtatattgaacattttttgggtcattgacagAATGTGGAGGGAGAAACTGCTGATAAAGCTGTGGTTAGTAATCATAATTCTGAATCACAAACCAGAAATGAGGCTTCTTCAGTGCAGAATACACATGAGG

Basic information

species Glycine max
transcript GLYMA20G33390.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991280|gb|BI316953.1|BI316953
EST:     AAGAGAGTGAAAATTTTATTCCCAACCAAGGATCACCTTTCACTCGGCAG                         AATGTGGAGGGAGAAAC
genomic: AAGAGAGTGAAAATTTTATTCCCAACCAAGGATCACCTTTCACTCGGCAGgttatggtgg ... tcattgacagAATGTGGAGGGAGAAAC
EST: gi|11412031|gb|BF424042.1|BF424042
EST:     AAGAGAGTGAAAATTTTATTCCCAACCAAGGATCACCTTTCACTCGGCAG                         AATGTGGAGGGAGAAAC
genomic: AAGAGAGTGAAAATTTTATTCCCAACCAAGGATCACCTTTCACTCGGCAGgttatggtgg ... tcattgacagAATGTGGAGGGAGAAAC
EST: gi|192295939|gb|FG990935.1|FG990935
EST:     AAGAGAGTGAAAATTTTATTCCCAACCAAGGATCACCTTTCACTCGGCAG                         AATGTGGAGGGAGAAACTGCTGATAAAGCTGTGGTTAGTAATCATAATTCT
genomic: AAGAGAGTGAAAATTTTATTCCCAACCAAGGATCACCTTTCACTCGGCAGgttatggtgg ... tcattgacagAATGTGGAGGGAGAAACTGCTGATAAAGCTGTGGTTAGTAATCATAATTCT
EST: gi|6719325|gb|AW306972.1|AW306972
EST:     ATTCCCAACCAAGGATCACCTTTCACTCGGCAG                         AATGTGGAGGGAGAAACTGCTGATAAAGCTGTGGTTAGTAATCATAATTCT
genomic: ATTCCCAACCAAGGATCACCTTTCACTCGGCAGgttatggtgg ... tcattgacagAATGTGGAGGGAGAAACTGCTGATAAAGCTGTGGTTAGTAATCATAATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatttgccttgtattatagctgtatattgaacattttttgggtcattgacagAATGTGGAGGGAGAAACTGCTGATAAAGCTGTGGTTAGTAATCATAATTCTGAATCACAAACCAGAAATGAGGCTTCTTCAGTGCAGAATACACATGAGG
                         tatattgaacattttt  TA-rich tract