1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACGGTTATTGGAATTGTCAATTGCAGAAGTCAGGGCTGAAAATTCTAAGCTTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtattacaattttcatatgaaggtgcgctataattttaataggtagctgctatttttcacaattaaatatgtatttcag
species | Glycine max |
transcript | GLYMA20G33350.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTEST: gi|57575832|gb|CX548803.1|CX548803
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTEST: gi|254315619|gb|GR825428.1|GR825428
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTEST: gi|9440171|gb|BE440681.1|BE440681
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTNTEST: gi|254315620|gb|GR825429.1|GR825429
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTEST: gi|58025303|gb|CX712044.1|CX712044
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTEST: gi|209697796|gb|BW670063.1|BW670063
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: GAGTTGACCAAG GAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTTEST: gi|58017943|gb|CX704685.1|CX704685
genomic: GAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
EST: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAG GAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
genomic: TTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtatta ... tgtatttcagGAACTCCAGTCAGTCCAGGGACAACTTGTGGCTGAGAGATCAAGATGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGTTATTGGAATTGTCAATTGCAGAAGTCAGGGCTGAAAATTCTAAGCTTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGgtatgtattacaattttcatatgaaggtgcgctataattttaataggtagctgctatttttcacaattaaatatgtatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG