1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gattgtgtaagcaattgtttgtactgtaaaaaacttataataattcataccctattatgttaatgcatattctttatctattgatttgtaccattaccagGGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAG
species | Glycine max |
transcript | GLYMA20G33350.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTGGTCAGTATTGACTGTTGTGAAGCAAAAAGATCCACTTTCTAGTGAG GGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCAEST: gi|57575832|gb|CX548803.1|CX548803
genomic: TTTGGTCAGTATTGACTGTTGTGAAGCAAAAAGATCCACTTTCTAGTGAGgtaattactc ... ccattaccagGGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCA
EST: CAGTATTGACTGTTGTGAAGCAAAAAGATCCACTTTCTAGTGAG GGTCTTAGTGTCTGTTCAGCAACATTTGGTGGAGAAAAGTATTTGTTAGCAEST: gi|254315619|gb|GR825428.1|GR825428
genomic: CAGTATTGACTGTTGTGAAGCAAAAAGATCCACTTTCTAGTGAGgtaattactc ... ccattaccagGGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCA
EST: TTTGGTCAGTATTGACTGTTGTGAAGCAAAAAGATCCACTTTCTAGTGAG GGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCAEST: gi|9440171|gb|BE440681.1|BE440681
genomic: TTTGGTCAGTATTGACTGTTGTGAAGCAAAAAGATCCACTTTCTAGTGAGgtaattactc ... ccattaccagGGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCA
EST: AAAAAGATCCACTTTCTAGTGAG GGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCAEST: gi|8283347|gb|BE020908.1|BE020908
genomic: AAAAAGATCCACTTTCTAGTGAGgtaattactc ... ccattaccagGGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCA
EST: TTTGGTCAGTATTGACTGTTGTGAAGCAAAAAGATCCACTGTCTAGTGAC GGTCTTAGTGTCTGTTCAGCACCAATTGGTGGAGAAAAGTATTTGTTAGCA
genomic: TTTGGTCAGTATTGACTGTTGTGAAGCAAAAAGATCCACTTTCTAGTGAGgtaattactc ... ccattaccagGGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCA
cataccctattatgttaatgcatattctttatctattgatttgtaccattaccagGGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAG
tattgat putative branch site (score: 3)
atattctttatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgtgtaagcaattgtttgtactgtaaaaaacttataataattcataccctattatgttaatgcatattctttatctattgatttgtaccattaccagGGTCTTAGTGTCTGTTCAGCAACAATTGGTGGAGAAAAGTATTTGTTAGCATTTGGAGGCTATAATGGGAGATATAGCAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT