Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttctcttaaagcatgtatctttcattctctgtttttcctttcgacattttttgtgtttgaaaagagatagtgtcaatgtgagtgggtatttttttttattaaaaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAATGGAGTAGATCCTAGTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTT

Basic information

species Glycine max
transcript GLYMA20G33290.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33290.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G10520.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttttctcttaaagcatgtatctttcattctctgtttttcctttcgacattttttgtgtttgaaaagagatagtgtcaatgtgagtgggtatttttttttattaaaaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTA------TCTAATGGAGTAGATCCTAGTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTT
               || ||| |||  ||  || | | |     ||||  |  || ||| | | ||  |    ||     |||| | | ||                      | | ||||||||||||| |||||| |||||||| | ||||||||| || |||      ||  ||| |||   ||  |  |||||||| ||||  |  |||||||        
-------------gtaaccatatatacttagttatatataagctctttacatgttgtttatatatgcgagctaatga--acaatataattg----------------------tgatagGATACTGGAGATAGCACCAGCAGCAAAAGGCTTGTTCTCTTTCCTAAGAGACTCAGATGAAGTCCCTCACAACAATCCTAAACTCAAAGCTCATGCTGTT------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213607391|gb|DB957171.1|DB957171
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213607754|gb|DB983793.1|DB983793
EST:     TAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTAAAACACTTC                         GATACTGTTGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213611018|gb|DB970945.1|DB970945
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209715329|gb|BW654216.1|BW654216
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213615203|gb|DB965011.1|DB965011
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213614692|gb|DB972876.1|DB972876
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209717876|gb|BW666067.1|BW666067
EST:     CAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: CAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213596344|gb|DB960245.1|DB960245
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|5820299|gb|AI988505.1|AI988505
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|151409697|gb|EV279505.1|EV279505
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213590526|gb|DB973299.1|DB973299
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|214008654|gb|DB988231.1|DB988231
EST:     GAAGCATTCAAGGCAAACAATCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209710755|gb|BW671046.1|BW671046
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213598500|gb|DB964206.1|DB964206
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|5820029|gb|AI988235.1|AI988235
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209701147|gb|BW652649.1|BW652649
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209705230|gb|BW673770.1|BW673770
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213602187|gb|DB962680.1|DB962680
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209701350|gb|BW655946.1|BW655946
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213597990|gb|DB972178.1|DB972178
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|151411158|gb|EV280969.1|EV280969
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209728090|gb|BW655325.1|BW655325
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209726352|gb|BW657998.1|BW657998
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|192322298|gb|FK014539.1|FK014539
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGTGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|5770820|gb|AI973994.1|AI973994
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213592536|gb|DB961796.1|DB961796
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|5820036|gb|AI988242.1|AI988242
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213591050|gb|DB973791.1|DB973791
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|5820197|gb|AI988403.1|AI988403
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209710385|gb|BW681284.1|BW681284
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|214006674|gb|DB987556.1|DB987556
EST:     AAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGT-TATATACACTTC                         GATACTGAAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: AAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGT-TCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|214004918|gb|DB989051.1|DB989051
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213594625|gb|DB959792.1|DB959792
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|192330252|gb|FK020552.1|FK020552
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|5770894|gb|AI974068.1|AI974068
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213616802|gb|DB971285.1|DB971285
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209706789|gb|BW678158.1|BW678158
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209708030|gb|BW662159.1|BW662159
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209715815|gb|BW674400.1|BW674400
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209708029|gb|BW662158.1|BW662158
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213604897|gb|DB956300.1|DB956300
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213592338|gb|DB971564.1|DB971564
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213601567|gb|DB980852.1|DB980852
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTGATACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209704531|gb|BW678447.1|BW678447
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|5820131|gb|AI988337.1|AI988337
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213599925|gb|DB966441.1|DB966441
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCACAGGACTTGTTCTCGTTTCTATCTCA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213610824|gb|DB963168.1|DB963168
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|151409903|gb|EV279711.1|EV279711
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|214009979|gb|DB989703.1|DB989703
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209725941|gb|BW669728.1|BW669728
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209717875|gb|BW666066.1|BW666066
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213610575|gb|DB960614.1|DB960614
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209726353|gb|BW657999.1|BW657999
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209715330|gb|BW654217.1|BW654217
EST:     AAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: AAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213604125|gb|DB974223.1|DB974223
EST:     TAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTTTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|5820497|gb|AI988703.1|AI988703
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209709542|gb|BW661869.1|BW661869
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213602358|gb|DB980421.1|DB980421
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTAGAACACTTC                         GATACTGCAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213591490|gb|DB955754.1|DB955754
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213613429|gb|DB978254.1|DB978254
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209714116|gb|BW679443.1|BW679443
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209710384|gb|BW681283.1|BW681283
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209701146|gb|BW652648.1|BW652648
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|213602859|gb|DB970550.1|DB970550
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209720045|gb|BW651114.1|BW651114
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
EST: gi|209704002|gb|BW667964.1|BW667964
EST:     GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTC                         GATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA
genomic: GAAGCATTCAAGGCAAACATTCCTCAATACAGCGTTGTGTTCTACACTTCgtaagttttc ... aaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaagagatagtgtcaatgtgagtgggtatttttttttattaaaaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAATGGAGTAGATCCTAGTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTT
                       agtgggtatttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttctcttaaagcatgtatctttcattctctgtttttcctttcgacattttttgtgtttgaaaagagatagtgtcaatgtgagtgggtatttttttttattaaaaattaacagGATACTGGAGAAAGCACCCGCAGCAAAGGACTTGTTCTCGTTTCTATCTAATGGAGTAGATCCTAGTAATCCTAAGCTCACGGGCCATGCTGAAAAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG