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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTTTATTATGTTCTGATACTGATTTTTTGTGCTCTTGTGTTCTGGCGTGAGTCTCCAGTTGGTGTGGTCTCCTTGGCTATGATGTGTGCAGGGGATGgtaacataataaatacactcctctctatattcctatctaattgatgatttttctgctttgattattcaacattgaacttgatggttttgcag

Basic information

species Glycine max
transcript GLYMA20G33150.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33150.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0074g00040.t01 (Vitis vinifera), 5'ss of exon 4
CCCCTTTATTATGTTCTGATACTGATTTTTTGTGCTCTTGTGTTCTGGCGTGAGTCTCCAGTTGGTGTGGTCTCCTTGGCTATGATGTGTGCAGGGGATGgtaacataataaatacactcctctctatattcctatctaattgatgatttttctgctttgattattcaacattgaacttgatggttttgcag
||  | ||||| || |||||  || || | ||  || | || |||||||||||||||||  |||| ||| |||| ||| | ||||||||||  ||||||||||||             ||||||     |  | | ||      |   |||  |  |   || ||| | |  ||| ||   |||||||    
CCTTTATATTACGTCCTGATTTTGCTTGTATGCACTATGGTCTTCTGGCGTGAGTCTCCTATTGGGGTGATCTCATTGTCAATGATGTGTGGTGGGGATGgtaac-------------tcctct-----tgtccaacttggcagtctgtttcttcttccaatcatttatctctga-ctcagtggttttag--