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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTGAGCAGAAAGCTGGTTCATATATTGTCTGGCTTGCTTTTTCTGGTTTCTTGGCCAATTTTCAGgtatcccatttcttcaattttttaatctttcatacgaggaaggtgtgtgaactgcaatgcattgattgctgctgctgctgcattctttgaatgttttgatctaattgctaggatag

Basic information

species Glycine max
transcript GLYMA20G33150.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33150.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0074g00040.t01 (Vitis vinifera), 5'ss of exon 2
GGTCTGAGCAGAAAGCTGGTTCATATATTGTCTGGCTTGCTTTTTCTGGTTTCTTGGCCAATTTTCAGgtatcccatttcttcaattttttaatctttcatacgaggaaggtgtgtgaactgcaatgcattgattgctgctgctgctgcattctttgaatgttttgatctaattgctaggatag
 || |||||||||| ||||| |||||||||||||| ||||||||  ||||||||||| |||||||||||| | |  | | |                  |||  ||  |  |   |  |||    ||| | ||||  || |  |  | || |  || |     ||| | ||||  |||  ||||
AGTTTGAGCAGAAAACTGGTCCATATATTGTCTGGGTTGCTTTTCATGGTTTCTTGGTCAATTTTCAGgtctgctttctgt------------------atataagacacattcttagact----tgcttggatt-ttgatattcttacactacttcacctgattgttttaatc-ctaaaatag