1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggtattttctcactgttttcattcaatgtaatcatacaaaaaatccattttttctgaggtagtctttctctccagTTGTAGTCTTCAACATGCTTGAACCAGGGAATGTTTCAAGAGCATTATGTGGAAGTTGACACTTTGATCGATCAAACTAGTAGAGTGGAGCATCAGCTTC
species | Glycine max |
transcript | GLYMA20G33030.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCCATGGACATGATGGCACTGGCATATTGTGAAGAGAATGGAATACCTG TTGTAGTCTTCAACATGCTTGAACCAGGGAATGTTTCAAGAGCATTATGTGEST: gi|31457968|gb|CD399996.1|CD399996
genomic: CTCCATGGACATGATGGCACTGGCATATTGTGAAGAGAATGGAATACCTGgttggtattt ... ttctctccagTTGTAGTCTTCAACATGCTTGAACCAGGGAATGTTTCAAGAGCATTATGTG
EST: CTCCATGGACATGATGGCACTGGCATATTGTGAAGAGAATGGAATACCTG TTGTAGTCTTCAACATGCTTGAACCAGGGAATGTTTCAAGAGCATTATGTG
genomic: CTCCATGGACATGATGGCACTGGCATATTGTGAAGAGAATGGAATACCTGgttggtattt ... ttctctccagTTGTAGTCTTCAACATGCTTGAACCAGGGAATGTTTCAAGAGCATTATGTG
attcaatgtaatcatacaaaaaatccattttttctgaggtagtctttctctccagTTGTAGTCTTCAACATGCTTGAACCAGGGAATGTTTCAAGAGCATTATGTGGAAGTTGACACTTTGATCGATCAAACTAGTAGAGTGGAGCATCAGCTTC
tagtctttctctcc CT-rich tract
taatcatacaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtattttctcactgttttcattcaatgtaatcatacaaaaaatccattttttctgaggtagtctttctctccagTTGTAGTCTTCAACATGCTTGAACCAGGGAATGTTTCAAGAGCATTATGTGGAAGTTGACACTTTGATCGATCAAACTAGTAGAGTGGAGCATCAGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT