1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagtgatgtaatatcaactttacagtacaacctgcctgaaaacttctagaaacatattattgattgcatcctgactttatgttattttctgtaaaacaagTATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAAGCTGGGTGTTCAGACACGTGTTCAGAATACATTCTTGATGCCAGAGGTT
species | Glycine max |
transcript | GLYMA20G33030.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGG TATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAAEST: gi|6846287|gb|AW348577.1|AW348577
genomic: GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGGgtaagtgatt ... gtaaaacaagTATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAA
EST: GCATGGGTGTCTGCTACCGGGTTGGATAGANNNATGGCTTACCAAATAGG TATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTNGAAAAEST: gi|208277967|gb|GE078334.1|GE078334
genomic: GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGGgtaagtgatt ... gtaaaacaagTATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAA
EST: GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGG TATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAA
genomic: GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGGgtaagtgatt ... gtaaaacaagTATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAA
ctagaaacatattattgattgcatcctgactttatgttattttctgtaaaacaagTATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAAGCTGGGTGTTCAGACACGTGTTCAGAATACATTCTTGATGCCAGAGGTT
tcctgac putative branch site (score: 2)
ttttctgt putative PPT
tttatgttattttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgatgtaatatcaactttacagtacaacctgcctgaaaacttctagaaacatattattgattgcatcctgactttatgttattttctgtaaaacaagTATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAAGCTGGGTGTTCAGACACGTGTTCAGAATACATTCTTGATGCCAGAGGTT
- -tgatgta
- - - - - - - - - - - - - - -acctgcc
- - - - - - - - - - - - - - - - - - - - - cttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatcc