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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGGgtaagtgattttagttctttgattgattatttatgaaattatttatactaattaagcaggttttttcttttaatgatggcattttgtgaggctctatatg...

Basic information

species Glycine max
transcript GLYMA20G33030.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33030.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0074g00240.t01 (Vitis vinifera), 5'ss of exon 4
GTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGGgtaagtgattttagttctttgattgattatttatgaaattatttatactaattaagcaggttttt------tcttttaatgatggcattttgtgaggctctatatg
||||| ||||||||||| |||||||||||||||||||| ||  ||||||| |||||||| ||  | ||||||||||  || |||||||| |||||| ||||   |   |  | | ||   |||  ||| ||| ||        |   ||   ||  |      ||| |   | ||   |||   |       | ||  
GTGGCAATTGTTGTTGGAGGTCGTAACTTCTTTTGTGGGGACTCATGGGTATCTGCTACTGGTCTAGATAGACCTACAGCATACCAAATTGGgtaa-tgatccca--ccaattaatggccatt-gtgatatttttctctagggtctggctcattcctgcaagttctgtgtttaatattattaaatcgaagcttgta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207819443|gb|GD791631.1|GD791631
EST:     GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGG                         TATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAA
genomic: GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGGgtaagtgatt ... gtaaaacaagTATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAA
EST: gi|208277967|gb|GE078334.1|GE078334
EST:     GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGG                         TATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAA
genomic: GCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGGgtaagtgatt ... gtaaaacaagTATGATGGGAACAGTTATGAATTCTATTTTGCTTCAATCTGCTTTGGAAAA