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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcccttgccttctttataaaaaaatttaacactggagattagtttttgttaatgttgcctagagctcaatttatacagGTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGG

Basic information

species Glycine max
transcript GLYMA20G33030.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33030.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0074g00240.t01 (Vitis vinifera), 3'ss of exon 3
gtattccct----tgccttct-ttataaaaaaatttaacactggagattagtttttgt---taatgttgcctagagctcaat--ttatacagGTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGG
|| || | |    ||   ||| ||| |  |  |  |    || |   ||    ||||    | | | ||  ||    |  ||  ||  ||||||||| ||||||||||| |||||||||||||||||||| ||  ||||||| |||||||| ||  | ||||||||||  || |||||||| ||
gtgttgcttgtactgttgtctcttacagcactacctgtttctagttgttttcatttgcatcttaagatgattatttttacatgatttcacagGTGGCAATTGTTGTTGGAGGTCGTAACTTCTTTTGTGGGGACTCATGGGTATCTGCTACTGGTCTAGATAGACCTACAGCATACCAAATTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaacactggagattagtttttgttaatgttgcctagagctcaatttatacagGTGGCCATTGTTGTTGGTGGTCGTAACTTCTTTTGTGGAGATGCATGGGTGTCTGCTACCGGGTTGGATAGACCTATGGCTTACCAAATAGG
                       tgttaat  putative branch site (score: 3)
              attagtttttgttaat  TA-rich tract