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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGATGTTTGGAGGGCATGGGACTGGTGGATGGTTGAGTCGTTATGATATCTATTATAATGATTGCATTATATTAGACAGAGgtgagaactttcactatacctatttagtgtatctagcacaattgctatattaagaaccatcattactgttgtctctgtttatctattctatttaaaacca...

Basic information

species Glycine max
transcript GLYMA20G32900.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32900.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G36360.4 (Arabidopsis thaliana), 5'ss of exon 10
TTGTTGATGTTTGGAGGGCATGGGACTGGTGGATGGTTGAGTCGTTATGATATCTATTATAATGATTGCATTATATTAGACAGAGgtgagaactt--tcactatacctatttagtgtatctagcacaattgctatattaagaaccatcattactgttgtctctgttt--atctattctatttaaaacca--------------------------------------------------------
 |  || | ||||| || ||||| |||||||||||| |||||||||||||| | || |||||||||   || || || |||||||||  |   ||  ||||| | |  ||    |   ||||| |  |    | | || | ||| |     |   ||  || || |   || |||  | |||    |                                                          
CTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAGgtaggtttttgctcactcttctcatgagattgttctaggatcaagaatttttttacaactaatgaaatgattaactgtgatgtaatttatcatttttctcgctgtgcttttttcaattctttgttaatgtttctgctaaatttttgtcttcacattccag

upper sequence: GLYMA20G32900.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0074g00620.t01 (Vitis vinifera), 5'ss of exon 11
TTGTTGATGTTTGGAGGGCATGGGACTGGTGGATGGTTGAGTCGTTATGATATCTATTATAATGATTGCATTATATTAGACAGAGgtgagaactttcactata-----cctatttagtgtatct-agcacaattgctatattaagaaccatcattactgttgtctctgtttatctattctatttaaaacca
 | ||| | ||||| ||||||||||||||||| ||||||||||||||||| || || || ||||| |||||| | || || || ||||||  ||||   | ||     |  | ||  ||| | | |    |    ||| ||||   | ||   ||    |||     |      |||| | ||        
CTCTTGTTATTTGGGGGGCATGGGACTGGTGGTTGGTTGAGTCGTTATGACATTTACTACAATGAATGCATTGTTTTGGATAGGGgtgagtgcttttcatgtatgaatctcaattgatgtttatcaatgaagccacta-attatccagcaggcttcaccttgcaggaggactgatattgtgttgtg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180189|gb|HO025404.1|HO025404
EST:     GTTGAGTCGTTATGATATCTATTATAATGATTGCATTATATTAGACAGAG                         TTTCAGCACAGTGGAAGCGGCTCTCCATAGGCAATGAACCCCCTCCTGCTA
genomic: GTTGAGTCGTTATGATATCTATTATAATGATTGCATTATATTAGACAGAGgtgagaactt ... ttgcattcagTTTCAGCACAGTGGAAGCGGCTCTCCATAGGCAATGAACCCCCTCCTGCTA