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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCTCCTATTGTTATCATCCATAACATATCGATGTCTGATGACAATCCACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgtgtttagatgttgtgattcaacgaatagtaatttattcaacttaaacataatttataatgaaccaaatgttacttagtttgattatatgca...

Basic information

species Glycine max
transcript GLYMA20G32880.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193484538|gb|FK450278.1|FK450278
EST:     ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: gi|207749703|gb|GD721961.1|GD721961
EST:     ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: gi|193448341|gb|FK411904.1|FK411904
EST:     GGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
genomic: GGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: gi|193475448|gb|FK442061.1|FK442061
EST:     ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: gi|208074156|gb|GD867821.1|GD867821
EST:     ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAAATTATGCTTAGGGGAAGCCTGC
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAA-TTATGCTTAGGG-AAGCCTGC
EST: gi|208340930|gb|GE137436.1|GE137436
EST:     ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: gi|193629284|gb|FK572842.1|FK572842
EST:     ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAG
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAG
EST: gi|193389000|gb|FK354823.1|FK354823
EST:     CAAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
genomic: C-AAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: gi|193481499|gb|FK445554.1|FK445554
EST:     AAGCATGGAAACAATTGAGGGATTTCTTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCA
genomic: AAGCATGGAAACAATTGAGGGATTTC-TAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCA
EST: gi|193369729|gb|FK338559.1|FK338559
EST:     ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: gi|193376257|gb|FK339598.1|FK339598
EST:     ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: gi|193467111|gb|FK429858.1|FK429858
EST:     CAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGTAG                         GCAAAGGTTTTGTGAGAGGAAGAATCAAATT
genomic: CAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAG-AGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCCTCCTATTGTTATCATCCATAACATATCGATGTCTGATGACAATCCACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgtgtttagatgttgtgattcaacgaatagtaatttattcaacttaaacataatttataatgaaccaaatgttacttagtttgattatatgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA