1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attacatgaaacttttattccaccttggaatttactcattaattgttgccttgttaaaactgcgcattgggcaatttttttttttattttaaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGATCAAAGTGTTGTATTGGTGAAATTCCTTGGCACGTTTGGTGGGCTGGG
species | Glycine max |
transcript | GLYMA20G32880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGEST: gi|207749703|gb|GD721961.1|GD721961
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGEST: gi|193448341|gb|FK411904.1|FK411904
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: GGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGEST: gi|193475448|gb|FK442061.1|FK442061
genomic: GGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGEST: gi|208074156|gb|GD867821.1|GD867821
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAAATTATGCTTAGGGGAAGCCTGCEST: gi|208340930|gb|GE137436.1|GE137436
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAA-TTATGCTTAGGG-AAGCCTGC
EST: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGEST: gi|193629284|gb|FK572842.1|FK572842
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGEST: gi|193389000|gb|FK354823.1|FK354823
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAG
EST: CAAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGEST: gi|193481499|gb|FK445554.1|FK445554
genomic: C-AAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: AAGCATGGAAACAATTGAGGGATTTCTTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAEST: gi|193369729|gb|FK338559.1|FK338559
genomic: AAGCATGGAAACAATTGAGGGATTTC-TAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCA
EST: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGEST: gi|193376257|gb|FK339598.1|FK339598
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGEST: gi|193467111|gb|FK429858.1|FK429858
genomic: ACAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGAGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAG
EST: CAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAGTAG GCAAAGGTTTTGTGAGAGGAAGAATCAAATT
genomic: CAAAACTGGAAGGTTGTAAGCATGGAAACAATTGAGGGATTTCTAAG-AGgtatgtttgt ... aaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATT
ttgccttgttaaaactgcgcattgggcaatttttttttttattttaaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGATCAAAGTGTTGTATTGGTGAAATTCCTTGGCACGTTTGGTGGGCTGGG
tttttttttttatttt CT-rich tract
aatttttttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacatgaaacttttattccaccttggaatttactcattaattgttgccttgttaaaactgcgcattgggcaatttttttttttattttaaactttcagGCAAAGGTTTTGTGAGAGGAAGAATCAAATTATGCTTAGGGAAGCCTGCAGATCAAAGTGTTGTATTGGTGAAATTCCTTGGCACGTTTGGTGGGCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - catgaaa
- - - - - - - - -ttccacc
- - - - - - - - - - - - - - - - - - - - - -tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactgc