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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcatttgacgtaaaagaccaatcttattattctttagtttttcactttgcctttgaagtttgaatctaattgcactctttcatgcacatcatactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGAGGGGCATGGGCCATGCCTGCACCCAATCAGCCAGTGGTATAAGATAAGA

Basic information

species Glycine max
transcript GLYMA20G32800.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32800.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0106g00640.t01 (Vitis vinifera), 3'ss of exon 3
--tgcatttgacgtaaaagaccaatcttattattctttagtttttcactttgcctttgaagtttgaatctaattgcactctttcatgcacatcatactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGAGGGGCATGGGCCATGCCTGCACCCAATCAGCCAGTGGTATAAGATAAGA
     ||      || |  |         || ||||  | ||  | | ||| | |   || | |    || | ||     |||  ||||  || |  ||||||||||||| |  | ||| ||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||   ||||      |  |   | | |
tgaatatactttctacataatttggtcagtttttctccacttagttattttacatgccaaatctcg--cttaatggttattttgttgcatgtctttatgcagTCTCATCAACAGCAACCTGATACAAGTTTTGGATTAGCCCGGCCCCGGTAAGGGGCATGGGCCATGCCTGCACCCTGCCAGCTGAAACTCAAGCTTGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426477|gb|CA937997.1|CA937997
EST:     CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAG                         TCTCATCAGCCCCCACCAGATGCAAGTTTTGGATT
genomic: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAGgtattaacag ... catactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATT
EST: gi|9564799|gb|BE474308.1|BE474308
EST:     CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAG                         TCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
genomic: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAGgtattaacag ... catactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
EST: gi|10847626|gb|BF071584.1|BF071584
EST:     CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAG                         TCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
genomic: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAGgtattaacag ... catactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
EST: gi|10844976|gb|BF068165.1|BF068165
EST:     CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAG                         TCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
genomic: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAGgtattaacag ... catactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgcctttgaagtttgaatctaattgcactctttcatgcacatcatactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGAGGGGCATGGGCCATGCCTGCACCCAATCAGCCAGTGGTATAAGATAAGA
                   atctaat  putative branch site (score: 3)
                  aatctaatt  TA-rich tract