1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttgtatttgactatattgagttctggttatataatataaaaactgttatatttgatgtatggattaacctaataatttacttataacttgcatagcagGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGCAATACAGCCAATGTATACAGCAGTATTAAATTACAACACTGAGTTTCCA
species | Glycine max |
transcript | GLYMA20G32800.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAG CEST: gi|10844234|gb|BF067548.1|BF067548
genomic: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... tgcatagcag-
EST: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAG CEST: gi|10844234|gb|BF067548.1|BF067548
genomic: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... tgcatagcag-
EST: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAG CEST: gi|27426477|gb|CA937997.1|CA937997
genomic: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... tgcatagcag-
EST: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAG GTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGCEST: gi|11413196|gb|BF425207.1|BF425207
genomic: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... tgcatagcagGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGC
EST: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAG GTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGCEST: gi|12489878|gb|BG043399.1|BG043399
genomic: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... tgcatagcagGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGC
EST: GTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAG GTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGC
genomic: GTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... tgcatagcagGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGC
tgttatatttgatgtatggattaacctaataatttacttataacttgcatagcagGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGCAATACAGCCAATGTATACAGCAGTATTAAATTACAACACTGAGTTTCCA
ttataac putative branch site (score: 2)
attaacctaataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgtatttgactatattgagttctggttatataatataaaaactgttatatttgatgtatggattaacctaataatttacttataacttgcatagcagGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTATGCAATACAGCCAATGTATACAGCAGTATTAAATTACAACACTGAGTTTCCA
tgttgta
- - - - - - - - - - - -tctggtt
- - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgg