1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgcatttgacgtaaaagaccaatcttattattctttagtttttcactttgcctttgaagtttgaatctaattgcactctttcatgcacatcatactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGAGGGGCATGGGCCATGCCTGCACCCAATCAGCCAGTGGTATAAGATAAGA
species | Glycine max |
transcript | GLYMA20G32800.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAG TCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTEST: gi|9564799|gb|BE474308.1|BE474308
genomic: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAGgtattaacag ... catactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATT
EST: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAG TCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGAEST: gi|10847626|gb|BF071584.1|BF071584
genomic: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAGgtattaacag ... catactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
EST: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAG TCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGAEST: gi|10844976|gb|BF068165.1|BF068165
genomic: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAGgtattaacag ... catactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
EST: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAG TCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
genomic: CTGGAATGCCGTTTATACATCATGAACATGTTCACCAACCCTTTGCACAGgtattaacag ... catactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGA
ctttgcctttgaagtttgaatctaattgcactctttcatgcacatcatactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGAGGGGCATGGGCCATGCCTGCACCCAATCAGCCAGTGGTATAAGATAAGA
atctaat putative branch site (score: 3)
aatctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatttgacgtaaaagaccaatcttattattctttagtttttcactttgcctttgaagtttgaatctaattgcactctttcatgcacatcatactgcagTCTCATCAGCCCCCACCAGATGCAAGTTTTGGATTGGCCCGGCCCCGGTGAGGGGCATGGGCCATGCCTGCACCCAATCAGCCAGTGGTATAAGATAAGA
tgcattt
- - - - - - aaaagacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcac