1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGAGCCAGTTGGTAGGTACAGGCAAAACAATAGGGTGGCTATATTTCGGGACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgccttttacctagttagtcatgcatttgtctgttaagttttgtgaccttgttgtcttgttcctctttgtcaaaataaatggttttagtttgc...
species | Glycine max |
transcript | GLYMA20G32800.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGAT-- -AGGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTAEST: gi|10844234|gb|BF067548.1|BF067548
genomic: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... acttgcatagCAGGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTA
EST: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAG CAGGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTAEST: gi|11413196|gb|BF425207.1|BF425207
genomic: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... acttgcatagCAGGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTA
EST: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAG --G-TATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTAEST: gi|12489878|gb|BG043399.1|BG043399
genomic: GACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... acttgcatagCAGGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTA
EST: GTTGACCGCAAAGATCCTGATTATGACAGGAACTATGAT-- -AGGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTA
genomic: GTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgc ... acttgcatagCAGGTATATGCAAAGATTTGATCCTGGTTTTGGGTTCAATGGAGGATCGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGCCAGTTGGTAGGTACAGGCAAAACAATAGGGTGGCTATATTTCGGGACCGTGAGGTTGACCGCAAAGATCCTGATTATGACAGGAACTATGATAGgtatgtgtgccttttacctagttagtcatgcatttgtctgttaagttttgtgaccttgttgtcttgttcctctttgtcaaaataaatggttttagtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataaa