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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaatttacagagttacagtaacttaatatattcttgggttccaactgttccatattctgaatccatagtctaaaattatcttttggggttttggacagAAATACCGTTTGCACACTAGAAGGCCAATTCCCATGGTTCACAACAGTTCCGATCCACAAGCAGCACCTTTTGTCCTTGTAGGGAACATTTTTGTCCAAT

Basic information

species Glycine max
transcript GLYMA20G32770.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812487|gb|BQ296965.1|BQ296965
EST:     TGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAG                         AAATACCGTTTGCACACTAGAAGGCCAATTCCCATGGTTCACAACAGTTCC
genomic: TGATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTGCAGgtatgttagt ... ttttggacagAAATACCGTTTGCACACTAGAAGGCCAATTCCCATGGTTCACAACAGTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgttccatattctgaatccatagtctaaaattatcttttggggttttggacagAAATACCGTTTGCACACTAGAAGGCCAATTCCCATGGTTCACAACAGTTCCGATCCACAAGCAGCACCTTTTGTCCTTGTAGGGAACATTTTTGTCCAAT
                        gtctaaa  putative branch site (score: 3)
                         tctaaaattatctttt  TA-rich tract