Sequence
atgc intronic sequence ATGC exonic sequenceCAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGgtaaggaaatcaaaagcttaattgtcaatttgtcattgtttgagtgagtttttgtgctttgtcaatcaaaagcttaattgagtgagttttgtgctttgtgttgaagagatgagttgaattgacttgtttatgtgtgtctaaattctattttcccgtggaaaattgttcag
Basic information
species | Glycine max |
transcript | GLYMA20G32770.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32770.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G68670.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGgtaaggaaatcaaaagcttaattgtcaatttgtcattgtttgagtgagtttttgtgctttgtcaatcaaaagcttaattgagtgagttttgtgctttgtgttgaagagatgagttgaattgacttgtttatgtgtgtctaaattctattttcccgtggaaaattgttcag
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TGAACATGAATCTTCTCCAGAACTTGTGAATAAT------AAGAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAATC---ATTCACC------GGATCTAA---ATCCAAAAGAGgtatttaaagttttgagctttttaaaggagttttagttttcgatta--tgaggaaataatcatgtgttaattgaattatag-----------------------------------------------------------------------
upper sequence: GLYMA20G32770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 2
CAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGgtaaggaaatcaaaagcttaattgtcaatttgtcattgtttgagtgagtttttgtgctttgtcaatcaaaagcttaattgagtgagttttgtgctttgtgttgaagagatgagttgaattgact-tgtttatgtgtgtctaaattctattttcccgtggaaaattgttcag-----
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------TGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAA-CCAGA--CCCCAGATCCACCCGTCAAAGAGgtacccacatgaacaa-aatttctaacattttga---aattttagctcctctctaatcctacattt-----------tttttttctcagagatcaaacaaggaat--aatggtttatgttttggtttatttcaactaaatttt-----ggaaaatttgttgttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213601449|gb|DB968737.1|DB968737EST: ACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAG GATGTGAGTAAGATAGTGTGTGGGGTGGAACTGAAGAGAAGTGGAAGTGGT
genomic: ACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGgtaaggaaat ... aattgttcagGATGTGAGTAAGATAGTGTGTGGGGTGGAACTGAAGAGAAGTGGAAGTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGCAAAGGGTTTCAAAGGAAAATAATAACAGTGATAAGAGGAAATCAGACTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCAGCTGAGGAGgtaaggaaatcaaaagcttaattgtcaatttgtcattgtttgagtgagtttttgtgctttgtcaatcaaaagcttaattgagtgagttttgtgctttgtgttgaagagatgagttgaattgacttgtttatgtgtgtctaaattctattttcccgtggaaaattgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG