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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTATATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttactgcaacttgtccaagcaactactttgtactgtactagagataaggtttggacagttcaaatttgtttttgtaaggctatggtttcttga...

Basic information

species Glycine max
transcript GLYMA20G32610.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32610.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G25670.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTATATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttactgcaacttgtccaagcaactactttgtactgtactagaga--taaggtttggacagttcaaatttgtttttgtaaggctatggtttcttga
||| || |||||||| |||||  | |||||||| |||||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||| ||||||||   || |  | |    |  | ||     |  ||| | || | ||||  |  |  | |||    |   ||  || |||| ||| |    ||  |||   ||
AGAACAAGAAGCTCTTTACTCAGCTATTCAAGGGTTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTATCCTGATCCTTGTGGTTGGACTCCTATTCAGgttttttgttttactttcttacaaaatctatgatttattcttttctagttacttgtgatttcttgaacacattttagtttctgttaaagaat--tttggaga

upper sequence: GLYMA20G32610.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G13230.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTATATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttactg----caacttgtccaagcaact-actttgtactgta-ctagagataaggtttggacagttcaaatttgtttttgtaaggctatggtttcttga
||| |  |||||  | |||||  | |||||||| |||||||||||||| ||||| || || | ||| ||||| |||||||||||||||||||||||||||||   | ||||      |   ||    ||  ||||  |||| || | |  |||||| || | |||| || || ||| |  ||  ||  |  |  || |  ||    
AGAACGTGAAGCCTTGTACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGATCCTTGTGGTTGGACTCCAATTCAGgtttttcttacaagtctctctttccttaaaaaacttgctttatagtttctctagagttatgttttgtacggt-caagtaagtcctta-attgtcatagactc----

upper sequence: GLYMA20G32610.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G68780.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGCAGGAAGCTCTATACTCCACCATTCAAGGCTTTGTTGGTGATTCCTGGAATGGCTCAGATCTATATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtaccttttactgcaacttgtcc------------aagcaactactttgtactgtactagagataaggtttggacagttcaaatttgtttttgtaaggctatggtttc-ttga---------------------------------------------
|||||| |  ||||||||||| ||||||||||||||||||||||| || |||||||||||  |||| ||||| || |||||||| |||||||| || ||||| | || |      |||  ||             ||  ||| ||     ||| |  |||  ||  | |||   |   ||||  || |  || |     |  |    | ||||                                             
AGAGCAAGCTGCTCTATACTCTACCATTCAAGGCTTTGTTGGTGAATCTTGGAATGGCTCTTATCTTTATCCTGACCCTTGTGGCTGGACTCCTATCCAGgtcctttctctcatcactattctttgattatcaataaaaaacaacaaaaaactatcttagtaat--gttttaagcctatcaagattatgattattgaattcggaagccgttgaaaatgttgagtagctgatgtaattctctgttgtttaactctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233626|gb|AW568898.1|AW568898
EST:     GGAATGGCTCAAATCTATATCCAGATCCTTGTGGTTGGACTCCAATTCAG                         GGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAAC
genomic: GGAATGGCTCAGATCTATATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtacctttta ... tcttctgtagGGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAAC