Sequence
atgc intronic sequence ATGC exonic sequence...aatcactctttgcaattcaatactgaaattgtaacttaactagaacatggtgattaattatttgtttaattgtgttttctgtgtttgttttcttctgtagGGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAACATTGGACCGGTCCATGACAATTCTCTGAGTTGTGCTCAAGATTTGGAAT
Basic information
species | Glycine max |
transcript | GLYMA20G32610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32610.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0011g02800.t01 (Vitis vinifera), 3'ss of exon 1
aatcactctttgcaattcaatactgaaattgtaacttaactagaacatggtgattaattatt-tgtttaattgtgttttctgtgttt---gttttcttctgtagGGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAACATTGGACCGGTCCATGACAATTCTCTGAGTTGTGCTCAAGATTTGGAAT
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-attattgcttaatctctgaaagtc---ttgagcttttaccattacaatttggtttagtatcatgctaacatcctaattgtatcttttcaatcttcttctgcagGGAGTCTCTTGTGATCTCTATGATGGTTTCTGGTATGTCACTGCCTTAAACATTGGACCTGTTCAAGACAACTCTCTTGATTGTGCCCATAATGTGGAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7233626|gb|AW568898.1|AW568898EST: GGAATGGCTCAAATCTATATCCAGATCCTTGTGGTTGGACTCCAATTCAG GGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAAC
genomic: GGAATGGCTCAGATCTATATCCAGATCCTTGTGGTTGGACTCCAATTCAGgtacctttta ... tcttctgtagGGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catggtgattaattatttgtttaattgtgttttctgtgtttgttttcttctgtagGGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAACATTGGACCGGTCCATGACAATTCTCTGAGTTGTGCTCAAGATTTGGAAT
ttttctgtgtttgttt CT-rich tract
tgattaattatttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatcactctttgcaattcaatactgaaattgtaacttaactagaacatggtgattaattatttgtttaattgtgttttctgtgtttgttttcttctgtagGGGGTCTCTTGTGATCTGTTTGATGGATTTTGGTATGTAACTGCCTTGAACATTGGACCGGTCCATGACAATTCTCTGAGTTGTGCTCAAGATTTGGAAT
- - - -ctttgca
- - - - - - - - - - - - - - - - - - - - - - -catggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt