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...tgttgctagtatgtatattatgacttgagtggtttgctacatgaaatttgtttgaatctacctgcttatggttctaacctaagctgcaattttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGG
species | Glycine max |
transcript | GLYMA20G32530.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTAEST: gi|208266975|gb|GE062342.1|GE062342
genomic: GGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG TCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTAEST: gi|21285609|gb|BQ473480.1|BQ473480
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTAEST: gi|208278463|gb|GE077108.1|GE077108
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
atttgtttgaatctacctgcttatggttctaacctaagctgcaattttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGG
ttctaac putative branch site (score: 1)
ttttcttgc putative PPT
aattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgctagtatgtatattatgacttgagtggtttgctacatgaaatttgtttgaatctacctgcttatggttctaacctaagctgcaattttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA