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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTGTTCCTTTTCTAAACCCAACACAACATCGTGTCCTTTTCTTCTCTTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctcttctcaccctttttcctttctttctttttctttccaaaatatcccaacttttaaaaaataatgccgtgtttgccttctaagaattactgg...

Basic information

species Glycine max
transcript GLYMA20G32530.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925385|gb|AW831350.1|AW831350
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|208174493|gb|GD971730.1|GD971730
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|208080337|gb|GD877141.1|GD877141
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGACCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|208141124|gb|GD938210.1|GD938210
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTCTGTTCCTTTTCTAAACCCAACACAACATCGTGTCCTTTTCTTCTCTTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctcttctcaccctttttcctttctttctttttctttccaaaatatcccaacttttaaaaaataatgccgtgtttgccttctaagaattactgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaata