1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttgaatatcagttatattacttatgtttcttgtttctgtgtaatgtcaaggagtttcatgattaaggttgatattgaaatgtttgtaatcctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCGGGATACTTGATGTGACTCTTAAACAGAAGGTCTGATGTCTGAAGGTTC
species | Glycine max |
transcript | GLYMA20G32530.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAG GATACCT-AAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATEST: gi|11274928|gb|BF325253.1|BF325253
genomic: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAGgtgactgaat ... cctgtgccagGAAAT-TGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTAT
EST: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAG GAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCEST: gi|254319054|gb|GR830510.1|GR830510
genomic: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAGgtgactgaat ... cctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATC
EST: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAG GAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCEST: gi|7640495|gb|AW734796.1|AW734796
genomic: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAGgtgactgaat ... cctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATC
EST: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAG GAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCEST: gi|21285609|gb|BQ473480.1|BQ473480
genomic: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAGgtgactgaat ... cctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATC
EST: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAG GAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCEST: gi|193339960|gb|FK306651.1|FK306651
genomic: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAGgtgactgaat ... cctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATC
EST: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAG GAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCEST: gi|7591047|gb|AW706788.1|AW706788
genomic: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAGgtgactgaat ... cctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATC
EST: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAG GAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATC
genomic: AGAAAATTATTGTGTTTGGGCAAGTCATCAAGGGAGAGGATGTTGTGCAGgtgactgaat ... cctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATC
gtcaaggagtttcatgattaaggttgatattgaaatgtttgtaatcctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCGGGATACTTGATGTGACTCTTAAACAGAAGGTCTGATGTCTGAAGGTTC
ggttgat putative branch site (score: 5)
atattgaaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaatatcagttatattacttatgtttcttgtttctgtgtaatgtcaaggagtttcatgattaaggttgatattgaaatgtttgtaatcctgtgccagGAAATTGAAGAAGTGGATACAGATGAACATTACAAGCCTAAAGTATCTATCGGGATACTTGATGTGACTCTTAAACAGAAGGTCTGATGTCTGAAGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG