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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttattcttctagtttttgcagtttaattttctgacatattcatacataatgacagtaatgatcataattttctaattgatggacattgtgattattaactag

Basic information

species Glycine max
transcript GLYMA20G32530.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256354|gb|BQ453242.1|BQ453242
EST:     GAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|11274928|gb|BF325253.1|BF325253
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|254319054|gb|GR830510.1|GR830510
EST:     GAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|7640495|gb|AW734796.1|AW734796
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|21285609|gb|BQ473480.1|BQ473480
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|7591047|gb|AW706788.1|AW706788
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttattcttctagtttttgcagtttaattttctgacatattcatacataatgacagtaatgatcataattttctaattgatggacattgtgattattaactag

- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA