Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193589714|gb|FK544630.1|FK544630EST: ACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACACTCTTCTCTAG GCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCACAAGA
genomic: ACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGgtaacataac ... ttttatgcagGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCACAAGA
EST:
gi|208312538|gb|GE111258.1|GE111258EST: ACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAG GCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCACAAGA
genomic: ACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGgtaacataac ... ttttatgcagGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCACAAGA
EST:
gi|207838323|gb|GD811077.1|GD811077EST: ACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAG GCGTGACTAGTTTCATCACTCATAGGGCCTTTTTTGATGCGCTAGCACAAG
genomic: ACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGgtaacataac ... ttttatgcagGCGTGAC-AGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCACAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgtagttaattaattgacatatacttttatttcatcaaatattttttatgcagGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCACAAGAGAGTGCAAGATTCCCGAGTGGCTTAAACTCTCTGGGGACTCATTTGTTT
aattgac putative branch site (score: 3)
tatttttt putative PPT
ttaattaattgacata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctggctaatgtcaatttgtatggctacatttttttatcaatgtagcatgtagttaattaattgacatatacttttatttcatcaaatattttttatgcagGCGTGACAGTTTCATCACTCATAGGGCCTTTTGTGATGCGCTAGCACAAGAGAGTGCAAGATTCCCGAGTGGCTTAAACTCTCTGGGGACTCATTTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA