Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207801854|gb|GD775226.1|GD775226EST: CACAGCGCCTCAAAAGAGACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
genomic: CACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST:
gi|193346317|gb|FK311685.1|FK311685EST: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAGCAA
genomic: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST:
gi|193444397|gb|FK406223.1|FK406223EST: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
genomic: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST:
gi|193699704|gb|FK640369.1|FK640369EST: CTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
genomic: CTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST:
gi|193349530|gb|FK318648.1|FK318648EST: ACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
genomic: ACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGAAGAAAGCCCTCAGATTACAACACACCATCAACCCTCCACAGTTTCTCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagcttagttgaatttcattacttattaaaccacacacacacatatacacaccctttgccaatttttttttactttttgcattttctcaagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA