1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttcctttgtgcatatatgtgcaattgattgaagcaaagagtttttttttttttttataataatttgttgtttgtcgtcatttttttgatggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAA
species | Glycine max |
transcript | GLYMA20G32480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACAGCGCCTCAAAAGAGACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAAEST: gi|193346317|gb|FK311685.1|FK311685
genomic: CACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAGCAAEST: gi|193444397|gb|FK406223.1|FK406223
genomic: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAAEST: gi|9986001|gb|BE660007.1|BE660007
genomic: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAAEST: gi|193699704|gb|FK640369.1|FK640369
genomic: TCCAACCACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST: CTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAAEST: gi|193349530|gb|FK318648.1|FK318648
genomic: CTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
EST: ACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAT ATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
genomic: ACAGCGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATgcaagtagct ... ggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAA
tttttttttttataataatttgttgtttgtcgtcatttttttgatggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAA
ttttgat putative branch site (score: 4)
ttttttataataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctttgtgcatatatgtgcaattgattgaagcaaagagtttttttttttttttataataatttgttgtttgtcgtcatttttttgatggggtaatagATCCAGATGCGGAGGTCATAAAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- tcctttg
- - - - -tgcatat
- - - - - - - - -tgtgcaa
- - - - - - - - - - - - - - - gaagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt