Sequence
atgc intronic sequence ATGC exonic sequenceAACTAAAACCAGCTGCATTTGCGGCGCTTGTTCCCAACAGTGCTAATAAACCACTGGAGGAGTTGATAGAAGAAATAATGGGAGACCATGAGATGTTGgtatgtatttgtttcctgaaccaatccttatatcattttcaatgagcttatgattataggaaataacatcttttatggctgcag
Basic information
species | Glycine max |
transcript | GLYMA20G32440.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32440.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G154549_T01 (Zea mays), 5'ss of exon 7
AACTAAAACCAGCTGCATTTGCGGCGCTTGTTCCCAACAGTGCTAATAAACCACTGGAGGAGTTGATAGAAGAAATAATGGGAGACCATGAGATGTTGgtatgtatttgtttcctgaaccaatccttat-atcattttcaatgagcttatg---attataggaaataacatcttttatggct-gcag
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GGCTGGAAGCAGCTGCCTTTGCTGCGCTTGTCCCTAACAGTGCAGAGAAGGTTCTCGGCGAAGTGATCGAGGAAATAATGGGAGACCATGAGATGCTGgttagc-tctgttttttttactaagcaacatcatagtaatcattctgttttttcgtgttctgagctaagtcctcccttacgctttgcag
upper sequence: GLYMA20G32440.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g04870.t01 (Vitis vinifera), 5'ss of exon 7
AACTAAAACCAGCTGCATTTGCGGCGCTTGTTCCCAACAGTGCTAATAAACCACTGGAGGAGTTGATAGAAGAAATAATGGGAGACCATGAGATGTTGgtatgtatttgtttcctgaaccaatccttatatcattttc----aatgagcttatgattataggaaataacatcttttatggc--tgcag
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GATTAGAAGCAGCTGTATTTGCAGCTCTTGTTCCCAACAGTGCTGATAAACCCCTCCAAGAGTTGATAGAAGAGATTATGGGAGATCATGAAATGCTGgtaggctgatatttcctcactgtatt-tcatatgattttctgcaaaggagtttaatttttttgctgataa-accttcaacttccatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22929164|gb|BU546303.1|BU546303EST: AACCACTGGAGGAGTTGATAGAAGAAATAATGGGAGACCATGAGATGTTG ACTGGGGAGCAGTTATGAAGATTTAAATTCCCACTGAATCCAGGTGGAGCG
genomic: AACCACTGGAGGAGTTGATAGAAGAAATAATGGGAGACCATGAGATGTTGgtatgtattt ... atggctgcagACTGGGGAGCAGTTATGAAGATTTAAATTCCCACTGAATCCAGGTGGAGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACTAAAACCAGCTGCATTTGCGGCGCTTGTTCCCAACAGTGCTAATAAACCACTGGAGGAGTTGATAGAAGAAATAATGGGAGACCATGAGATGTTGgtatgtatttgtttcctgaaccaatccttatatcattttcaatgagcttatgattataggaaataacatcttttatggctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG