1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttagatgtattagcattcaactgtctaggccttatatttttttaataatctttccaaatatgcctttaatagtataatgtgcatcctgatcttgagcagATTCAACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTGAAG
species | Glycine max |
transcript | GLYMA20G32440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTTATTGTTGTTGGGCTTTGAAGCAGATGAAGCTCTGAAG ATTCAACAGCTTTTGAAAGAGTTGGATGGTGAATTCCAGAAGEST: gi|22929164|gb|BU546303.1|BU546303
genomic: GCCTTATTGTTGTTGGGCTTTGAAGCAGATGAAGCTCTGAAGgtgatcttac ... tcttgagcagATTCAACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTGAAG
EST: GAAGCAGATGAAGCTCTGAAG ATTCAACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTGAAG
genomic: GAAGCAGATGAAGCTCTGAAGgtgatcttac ... tcttgagcagATTCAACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTGAAG
ataatctttccaaatatgcctttaatagtataatgtgcatcctgatcttgagcagATTCAACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTGAAG
tcctgat putative branch site (score: 3)
tttaatagtataatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagatgtattagcattcaactgtctaggccttatatttttttaataatctttccaaatatgcctttaatagtataatgtgcatcctgatcttgagcagATTCAACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - -gcattca
- - - - - - - - - - - - -ctaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatcc