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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTCTCTTAGGTGATTCTGGTGTTGGCAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatatgttgcttcggtacttttattttattttttaatataatttttcttaatatggtttatgatataaattttttgtctttttatgttaattattccatggaaattttcttatatgttttagactctgtaatgtaag

Basic information

species Glycine max
transcript GLYMA20G32320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32320.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g05740.1 (Oryza sativa), 5'ss of exon 3
CTTGTTCTCTTAGGTGATTCTGGTGTTGGCAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatatgttgcttcggtacttttattttattttttaatataatttttcttaatatggtttatgatataaattttttgtctttttatgtt-aattattccatggaaattttcttatatgttttagactctgtaatgtaag
 | ||  |  | ||||| |||||||| || ||||| || |||||||| || ||||||||||||||||||||||| || || ||||| | ||  ||||  ||  ||   ||  ||| | ||  |||| | ||| |||    ||        |||  |   || ||   ||   | |||  ||| ||  |     |||| || | ||  |||                 
TTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGgtgattac-tgtt--ttgagtctcttagtttcagttgataatgttattcttcacctta--------gatgcatgattcttactttcagaagttcgattgttttaaacttatttcctcaaataatttcag--------------

upper sequence: GLYMA20G32320.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g30520.1 (Oryza sativa), 5'ss of exon 3
CTTGTTCTCTTAGGTGATTCTGGTGTTGGCAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatatgttgcttcggtacttttattttattttttaatataatttttcttaatatggtttatgatataa-attttttgtctttttatgttaattattccatggaaattttcttatatgttttagactctgtaatgtaag
 | ||  |  | || ||||| |||||||| ||||| || |||||||| || ||||| |||||||||||||| || || || ||||| || | | |   |||   || ||||      |||  |      |     |   || || ||     ||||| ||   || |  | || ||||  || |   |    |||||                              
TTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGgtgaa-aca-gacacttgattattttttacaggtttcctgtacagaggacacaccatttgattctccctataatatggcttattctattctgtttgttttattaaatgaatttag----------------------------

upper sequence: GLYMA20G32320.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G362088_T02 (Zea mays), 5'ss of exon 4
CTTGTTCTCTTAGGTGATTCTGGTGTTGGCAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatatgttgcttcggtacttttattttattttttaatataatttttcttaatatggtttatgatataaattttttgtctttttatgttaattattccatggaaattttcttatatgttttagactctgtaatgtaag
 | ||  |  | || || || |||||||| ||||| || |||||||| || ||||||||||||||||||||||| || || ||||| | |   |  || || | |        |  |    | |||  || ||| |||  |  | |  |  || |  |||      ||| |  | | || |  |  |  |                                    
TTGGTATTGCTGGGAGACTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGTTTTGTTCGTGGTCAGTTTGATCCTACTTCCAAGgtgatt---tactgttttgat----cagatcgacccatgaatgaaactttactt--tcggttgcagcatttccattccccaacttatcttctcaaatggtt-acag------------------------------------

upper sequence: GLYMA20G32320.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G54840.2 (Arabidopsis thaliana), 5'ss of exon 3
CTTGTTCTCTTAGGTGATTCTGGTGTTGGCAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatata----tgttgcttcggtacttttattttattttttaatataatttttcttaatatggt-ttatgatataaat---tttttgtctttttatgttaattattccatggaaattttcttatatgttttagactctgtaatgtaag
 | ||||| ||||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||||||  | ||||||||||||| || |    ||||   |   |   ||||||  |   | | | |    ||||   || |   |  | |||| | | |   | || | || ||   ||  | |  ||       |  | || |    |  ||| || ||||       
TTAGTTCTATTAGGAGACTCTGGTGTTGGTAAAAGTTGTATTGTCCTTCGATTTGTACGTGGTCAGTTTGACGCTACATCTAAGgtaagtaaagccttgttatctaattgtctttattg-accatctgacac--ctttttagaacaccatgctctgatgtgagtgaatattagactattagagtatacttatctgccactagat-ctcaagactactag-ctatgtatcag---

upper sequence: GLYMA20G32320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 3
CTTGTTCTCTTAGGTGATTCTGGTGTTGGCAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaa---atatatgttgcttcg-------------gtacttttattttattttttaatata----atttttcttaatatggttt-atgata-taaatttt-----ttgtctttttatgttaa-----------ttattccatgg-aaattttcttatatgttttagactctgtaatgtaag
|| ||| | || || |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||| || ||||| |||||||   |||||  | |||                  | |||| ||||   ||||| ||||    ||| |  | ||  | ||||  ||  | |  || ||        || | | |||  ||           ||||| ||||  | |||| |||| ||   ||   ||   |||  | ||
CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatatattatgtgatgcacattttttttttcccttttattatattaaattctgttcaaccttgttttgtgccaatggatgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208162464|gb|GD963167.1|GD963167
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACT
EST: gi|298188274|gb|HO034967.1|HO034967
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|151401597|gb|EV271411.1|EV271411
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|14009240|gb|BG725844.1|BG725844
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|21887641|gb|BQ740854.1|BQ740854
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|120530730|gb|EH258863.1|EH258863
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|33388034|gb|CA851241.1|CA851241
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|120530900|gb|EH259033.1|EH259033
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|213603351|gb|DB966610.1|DB966610
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|14126037|gb|BG790475.1|BG790475
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|11687687|gb|BF595363.1|BF595363
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|58017129|gb|CX703871.1|CX703871
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|151409251|gb|EV279059.1|EV279059
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|192303625|gb|FG998635.1|FG998635
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|151399728|gb|EV269599.1|EV269599
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|13478097|gb|BG507714.1|BG507714
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|19053755|gb|BM732422.1|BM732422
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|6912828|gb|AW394312.1|AW394312
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|6665996|gb|AW277455.1|AW277455
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
EST: gi|6455577|gb|AW186260.1|AW186260
EST:     GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAG                         GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT
genomic: GCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaatatat ... gtaatgtaagGTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCT