1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAAATTATTACCATTCATTCTTATTCATCAACGTCCCCCCTTCTGTGCCCACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatattctacccatcttgtgttttgttcttcatgtatttatggctaaagttttaggctttttttgaaatcttatgttatgttgttgatttagccc...
species | Glycine max |
transcript | GLYMA20G32320.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|298188274|gb|HO034967.1|HO034967
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: ACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|207710286|gb|GD689752.1|GD689752
genomic: ACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATEST: gi|151401597|gb|EV271411.1|EV271411
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAAT
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|14009240|gb|BG725844.1|BG725844
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|21887641|gb|BQ740854.1|BQ740854
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|120530730|gb|EH258863.1|EH258863
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: ACTTCCAAATTCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCNCAATTCCGAGAATGGTGGAGGEST: gi|33388034|gb|CA851241.1|CA851241
genomic: ACTTCCAAA-TCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGA-CC-CAATTCCGAGAATGGTGGAGG
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|120530900|gb|EH259033.1|EH259033
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|213603351|gb|DB966610.1|DB966610
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|14126037|gb|BG790475.1|BG790475
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|11687687|gb|BF595363.1|BF595363
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|58017129|gb|CX703871.1|CX703871
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: TCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|151409251|gb|EV279059.1|EV279059
genomic: TCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|192303625|gb|FG998635.1|FG998635
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCCCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|151399728|gb|EV269599.1|EV269599
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|19053755|gb|BM732422.1|BM732422
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|6912828|gb|AW394312.1|AW394312
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|6665996|gb|AW277455.1|AW277455
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: TCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGCEST: gi|6455577|gb|AW186260.1|AW186260
genomic: TCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
EST: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAG ATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
genomic: CACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatat ... tggtttgcagATAGGGATTCAAGGCAGTTGGGTCGACCCAATTCCGAGAATGGTGGAGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAATTATTACCATTCATTCTTATTCATCAACGTCCCCCCTTCTGTGCCCACTTCCAAATCTTCTCCTCTCGCTATGGGTTGTGGCTCCTCCCTTCCAGgtaatcatattctacccatcttgtgttttgttcttcatgtatttatggctaaagttttaggctttttttgaaatcttatgttatgttgttgatttagccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC