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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCAGAACAGAAGAAATGTGACAAGTGCTTTGCATACAAGCCTCCCAGGACCCATCATTGTCGAGTTTGCAGAAGGTGTATTCTGAAAATGgtaggtcggttgcgtctcggcaattgatgttactttgagcttcaatttcacatttgagttcctgaagtaaggatttattttgaccattttatttgatggctaaatatgatgtag

Basic information

species Glycine max
transcript GLYMA20G32280.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32280.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 5'ss of exon 2
AATGCAGAACAGAAGAAATGTGACAAGTGCTTTGCATACAAGCCTCCCAGGACCCATCATTGTCGAGTTTGCAGAAGGTGTATTCTGAAAATGgtaggtcggttgcgtctcggcaattgatgttactttgagcttcaatttcacatttgagttcctgaagtaaggatttattttgaccattttatttgatggctaaatatgatgtag
  || | ||   | | | |||||||| || | |   ||||||||||||||| | |||||||| || ||||| ||||||||| || | |  |||||| ||  | |           ||| |||  |  || || |   |   || | |||| ||  | || | | | ||| || | || | |  | |  |||                
GGTGGACAATTAAGGCATTGTGACAAATGTTGTATCTACAAGCCTCCCAGGGCTCATCATTGCCGTGTTTGTAGAAGGTGTGTTTTAAGGATGgtatgtgtgctagaatgaattgatttatg--atcttcagttatga--ccataattgaattttt-aattgatgctttcttctcac-actaaaatcaatgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237203|gb|BE806091.1|BE806091
EST:     AGAAGGTGTA-TCTGGATAATG                         GATCATCACTGCTTCGTGGATAAATACCTGTGTTGGTCATTGGAATTATA
genomic: AGAAGGTGTATTCT-GAAAATGgtaggtcggt ... tatgatgtagGATCATCACTGCTT-GTGGATAAATAACTGTGTTGGTTATTGGAATTATA