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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcggttgcgtctcggcaattgatgttactttgagcttcaatttcacatttgagttcctgaagtaaggatttattttgaccattttatttgatggctaaatatgatgtagGATCATCACTGCTTGTGGATAAATAACTGTGTTGGTTATTGGAATTATAAGGCTTTCTTTGTTTTTGTATTCTATGCCACCACGGCAAGTATTTATTCTA

Basic information

species Glycine max
transcript GLYMA20G32280.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32280.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 2
gtaggtcggttgcgtctcggcaattgatgttactttgagcttcaatttcacatttgagttcctgaagtaaggatttattttgaccattttatttgatggctaaatatgatgtagGATCATCACTGCTTGTGGATAAATAACTGTGTTGGTTATTGGAATTATAAGGCTTTCTTTGTTTTTGTATTCTATGCCACCACGGCAAGTATTTATTCTA
||| ||  | |           ||| |||  |  || || |   |   || | |||| ||  | || | | | ||| || | ||               |||||    ||| ||||||| ||||| ||||||||||| || ||||||||||||||||| |||||||| ||  |  |  |||| || ||||| || |  | ||| ||  | ||||
gtatgtgtgctagaatgaattgatttatg--atcttcagttatgac--cataattgaattttt-aattgatgctttcttctcac--------------actaaaatcaatgcagGATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAGGCCTTTGTGATGCTTGTCTTATATGCAACTATTGGAAGCATCCACTCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237203|gb|BE806091.1|BE806091
EST:     AGAAGGTGTA-TCTGGATAATG                         GATCATCACTGCTTCGTGGATAAATACCTGTGTTGGTCATTGGAATTATA
genomic: AGAAGGTGTATTCT-GAAAATGgtaggtcggt ... tatgatgtagGATCATCACTGCTT-GTGGATAAATAACTGTGTTGGTTATTGGAATTATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgaagtaaggatttattttgaccattttatttgatggctaaatatgatgtagGATCATCACTGCTTGTGGATAAATAACTGTGTTGGTTATTGGAATTATAAGGCTTTCTTTGTTTTTGTATTCTATGCCACCACGGCAAGTATTTATTCTA
                                      ggctaaa  putative branch site (score: 3)
             atttattttgaccatt  TA-rich tract